PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6792_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 276aa    MW: 31157.5 Da    PI: 6.5402
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6792_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-12106152354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 ++h e+Er RR+++N+ f  Lr ++P+       K++Ka+ Le +v+YI++L
  RrC6792_p1 106 MNHVEAERLRREKLNKQFYALRAVVPNV-----SKMDKASLLEDTVKYIREL 152
                 5899***********************6.....5****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.085103152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-16105172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.30E-11106153No hitNo description
Gene3DG3DSA:4.10.280.108.8E-15107173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-10107152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-13109158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MNLLNSDDAL FMNDAFLNAS DLWPLTPADI SQRALAPEAI NSSSDSWPLV PPAYFGQIQY  60
EESNILASSV KLEDSFQFHI DAKTTPENKP PKKRGRRPTH GKEGPMNHVE AERLRREKLN  120
KQFYALRAVV PNVSKMDKAS LLEDTVKYIR ELKLNAENAE SEKNAIEIQL NELNEKMAGR  180
RKGSSSVCSG GEKESEIEVK MDVKVMDRDA MIRLESSKNN HPCARLMSAF MDLELEVNYA  240
SISVINDLMI QQATVKMGSR IYKQEQLRNL LLSKIG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009101672.11e-157PREDICTED: transcription factor bHLH28-like
SwissprotQ9LUK77e-76BH028_ARATH; Transcription factor bHLH28
TrEMBLM4E8861e-157M4E886_BRARP; Uncharacterized protein
STRINGBra024992.1-P1e-157(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2031456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46830.14e-77NACL-inducible gene 1